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superintervalsr - Fast, Memory-Efficient Interval Operations for Genomics
Provides a fast, memory-efficient data structure for interval intersection queries using a novel superset-index approach. SuperIntervals maintains intervals in position-sorted order, enabling cache-friendly searches and SIMD-optimized counting operations. Chromosome- and strand-aware indexes support repeated genomic queries while retaining GRanges metadata.
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infrastructuredatarepresentationgenomeannotationsequencingcpp
3.30 score 7 scripts